Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs2372656 chr3:80582446 T/C 7.16E-5 175 19.53 24.77 27.2 KM Plot
PCPG rs2372657 chr3:80582413 C/A 7.21E-5 175 19.53 24.77 27.2 KM Plot
PCPG rs2372658 chr3:80578941 A/T 6.94E-5 176 19.53 24.53 27.2 KM Plot
PCPG rs2372659 chr3:80567815 C/T 6.03E-5 178 19.53 24.03 27.23 KM Plot
PCPG rs2379177 chr1:106638189 A/C 0.000211 178 3.17 27.27 25.28 KM Plot
PCPG rs2392423 chr7:36157988 T/C 0.000452 177 25.87 24.23 14.37 KM Plot
PCPG rs2411978 chr17:47353219 A/G 4.38E-6 175 15 23.03 25.77 KM Plot
PCPG rs2439744 chr12:69032598 A/G 6.49E-8 177 14.4 27.82 23.82 KM Plot
PCPG rs2439759 chr12:69022440 A/T 6.0E-8 178 14.4 27.82 23.53 KM Plot
PCPG rs2441384 chr2:136435736 T/C 0.00021 178 25.53 25.67 14.5 KM Plot
PCPG rs2449572 chr17:3244225 T/G 0.000226 171 18.1 25.87 26.88 KM Plot
PCPG rs2479734 chr13:114179366 G/A 4.67E-12 177 24.17 30.33 3.32 KM Plot
PCPG rs2479741 chr13:114166089 G/A 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs2479743 chr13:114165260 G/A 4.72E-12 177 24.1 29.95 3.32 KM Plot
PCPG rs2479744 chr13:114165250 C/T 0.000385 178 24.23 28.95 3.7 KM Plot